Genome assembly (repeat-masked)
Predicted coding sequences
Predicted peptide sequences
Predicted gene annotations
Illumina short reads under the BioProject ID PRJDB5392
The gene annotation data is mirrored to figshare.
CVG dataset: 233 one-to-one vertebrate ortholog groups to be fed in BUSCO and CEGMA. Extended scripts of CEGMA are also included in this package (Hara et al., 2015).
Paroedura picta (Pictus gecko, Madagascar ground gecko).
[Wikipedia]
[NCBI Taxonomy ID: 143630]
[The IUCN Red List]
For illumina sequencing, three embryos were sacrificed for total RNA extraction and sequenced separately.
The first two were processed as whole embryos, at 9 days post oviposition (dpo)[2] and four days before estimated date of oviposition (-4 dpo). The third one at 30 dpo was dissected, and total RNA was separately extracted from the head, tail and liver.
For the rest of the details of sequencing and assembly, please refer to our publication.